Recommended Vault Structure: What You Write, What AI Maintains
This is not a rigid template. It is a proven approach: clarify responsibilities first, then refine details.
One Boundary to Remember
Your vault should separate two content types:
- Your source content: journals, quick notes, highlights, meeting notes
- AI-maintained content: summaries, topic pages, cross-note synthesis
Benefits:
- less accidental overwrite
- clearer review paths
- better portability if you stop using any tool
A Practical Structure (Rename as Needed)
my-obsidian-notes/
1. index/
2. templates/
3.1 notes/
4.1 attachments/
5.1 journal/
5.2 creation/
6. source-material/
7. wiki/
Think of 7. wiki/ as your organization layer:
- index.md: main entry
- log.md: organization history
- topic subfolders: concepts, methods, viewpoints, synthesis
Suggested AI Boundaries
AI can modify
- organization pages under
7. wiki/ - navigation links in index pages
AI should not modify
- your source notes (
3.1,5.1,6)
This boundary protects long-term control.
Naming Suggestions (Simple and Sufficient)
- topic page:
topic-xxx.md - method page:
method-xxx.md - analysis page:
analysis-xxx.md - summary page:
YYYY-MM-DD-summary-xxx.md
Do not over-engineer naming rules. Fast retrieval is the real criterion.
When Should You Restructure?
Only restructure if one of these is true:
- finding content has been painful for two consecutive weeks
- one topic is repeatedly split across too many folders
- output work keeps repeating the same manual organization steps
If it is only “not perfect,” keep writing first.
One-Line Advice
Set boundaries first, optimize structure gradually.
Structure is not for visual neatness. It exists so writing can continue, reconnect, and ship.